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I've searched for a long time a program that could draw hypergraphs, I've onl found the (marvelous) dot program on linux that can draw graphs. Anyone knows an equvalent for hypergraphs?

+1  A: 

There's a java implementation on sourceforge that works pretty well.

Rich Seller
A: 

As far as I can gather from the definition of hypergraphs in wikipedia, hypergraphs are already included in the dot program. Try subgraphs!

NomeN