A couple sites of mine recently got "hacked". Someone was able to add a line of JavaScript to the bottom of every page on the site.
The server is a Windows Server 2003, and has Cold Fusion 8 and MySQL 5.x installed and running.
Looking into the code on each page shows that none of the pages were modified. The JavaScript is not in the code files themselves. This leads me to believe it is an IIS problem, but I am unsure and cannot find anything that would be able to do this within IIS.
The JavaScript being added redirects a user to another page only when they come from Google, or at least it appears to work this way.
Any help on how someone was able to accomplish this as well as removing it would be greatly appreciated.
Another way to word the question thanks to @Jeffrey Hantin
How do you systematically modify output from IIS without modifying individual pages?
EDIT: A bit more testing has shown that only the .cfm pages add the extra javascript. Added a new .cfm and the js was there but a .html did not have it.
Edit2: Turns out to have been a coldfusion problem after all. Somehow the pages OnRequestEnd.cfm were created on the sites and added that js.