That's certainly an interesting problem. I don't have a solution other than perhaps to change the design so that there is no dependence on undefined behavior of the order or link/dll startup. Have you considered linking with the older linker? (or whatever the VS.NET term is)
Because the behavior of your variable and allocator relied on some (unknown at the time) arbitrary order of startup I would probably fix that so that it is not an issue in the future. I guess you are really asking if anyone knows how to do some voodoo in VC9 to make the problem disappear. I am interested in hearing it as well.