I need help on this data file to be edited in SOM_PAK format

Question

Hi Experts, I am working on Self Organizing Map (SOM) Implementation and i have a microarray dataset which i am trying to read in using some_read_data function, but i keep having an errors when i edit it to have it in SOM_PAK form which is recognise by SOM for reading such as

??? Error using ==> somtoolbox\som_read_data.m Only 69 vector components on input file data line 1 (dimension is 70)

Error in ==> SomMainFunction at 3 sD = som_read_data('B_r2.txt');

but when i try to read the data without editing which is the original file as shown here: http://rapidshare.com/files/376239367/DLBCL.txt.html

It indicates "Data read OK", but i have the following error

??? Error using ==> unknown Out of memory. Type HELP MEMORY for your options.

Error in ==> somtoolbox\som_bmus.m at 189 Bmus = zeros(dlen,length(which_bmus));

Error in ==> somvis\somvis_p_matrix.m at 41 [dummy dists] = som_bmus (dat, dat, 2:datlen);

Error in ==> SomMainFunction at 16 [pheight rad_real perc] = somvis_p_matrix(sM,sD);

You can get the datafile from here:http://rapidshare.com/files/376239367/DLBCL.txt.html you can also download the toolbox from here:http://www.ifs.tuwien.ac.at/dm/somvis-matlab/index.html#Installation

I need someone to help me correct this data for me and put it in SOM_PAK format. I have tried getting it in SOM_PAK format, but it still giving me errors:

Answer 1

In B_r2.txt your first column is not the data, just row numbers, delete it. The number in the first row should be number of columns. Why it's 47?

Answer 2

Sorry for not providing the link to the toolbox. Here it is:http://www.ifs.tuwien.ac.at/dm/somvis-matlab/index.html#Installation

I changed the first row to 69 and then to 70 because to run the program because the data consists of 9217 rows, 70 columns.

But i have the error below: ??? Error using ==> unknown Out of memory. Type HELP MEMORY for your options.

Error in ==> somtoolbox\som_bmus.m at 189 Bmus = zeros(dlen,length(which_bmus));

Error in ==> somvis\somvis_p_matrix.m at 41 [dummy dists] = som_bmus (dat, dat, 2:datlen);

Error in ==> testsomDLBCL at 93 [pheight rad_real perc] = somvis_p_matrix(sM,sD);

I don't know if i have to increase the memorr due to inadequate space or what? Any idea why? thanks