Similar to the previous subelement sort, but I have a few extra layers of nodes. I can't figure out a simple extension to the previous answer that works. http://stackoverflow.com/questions/572854/how-to-sort-a-subelement-of-xml-with-xslt
The simplified input example:
<Iteration>
  <Iteration_query-ID>NODE_10008</Iteration_query-ID>
  <Iteration_query-def>NODE_10008</Iteration_query-def>
  <Iteration_query-len>339</Iteration_query-len>
  <Iteration_hits>
    <Hit>
      <Hit_id>110679166</Hit_id>
      <Hit_def>[Roseobacter litoralis Och 149]</Hit_def>
      <Hit_len>68</Hit_len>
      <Hit_hsps>
        <Hsp>
          <Hsp_score>300.0</Hsp_score>
          <Hsp_evalue>4.94413E-26</Hsp_evalue>
          <Hsp_query-from>69</Hsp_query-from>
          <Hsp_query-to>272</Hsp_query-to>
        </Hsp>
      </Hit_hsps>
    </Hit>
    <Hit>
      <Hit_id>114767284</Hit_id>
      <Hit_def>[Roseovarius sp. HTCC2601]</Hit_def>
      <Hit_len>68</Hit_len>
      <Hit_hsps>
        <Hsp>
          <Hsp_bit-score>127.487</Hsp_bit-score>
          <Hsp_score>319.0</Hsp_score>
          <Hsp_evalue>3.0968E-28</Hsp_evalue>
          <Hsp_query-from>69</Hsp_query-from>
          <Hsp_query-to>272</Hsp_query-to>
        </Hsp>
      </Hit_hsps>
    </Hit>
  </Iteration_hits>
</Iteration>
I want to sort by one of the Hsp attributes, such as Hsp_score. I've been able to get it to sort, but I can't figure out how to keep it from dropping out some of the Hit nodes:
<xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
version="1.0">
    <xsl:import href="identity.xsl"/>
    <!--
    Iteration/Iteration_hits/Hit/Hit_hsps/Hsp
    -->
    <xsl:template match="Iteration_hits">
        <xsl:copy>
           <xsl:apply-templates select="Hit/Hit_hsps/Hsp">
                <xsl:sort select="Hsp_score" order="descending"/>
            </xsl:apply-templates>
        </xsl:copy>
    </xsl:template>
</xsl:stylesheet>