Please be clear: there is a major difference between Linq and LinqToSql. Linq is great and you should be using it if at all possible. LinqToSql is not great and has many problems:
Do not use the Visual Studio 2008 LinqToSql O/R Designer
The drawbacks of adopting Linq To Sql
To use Linq, you need an ORM of some sort. You have many options for ORMs in the .NET world. If you like what LinqToSql offers, you may be most comfortable using SubSonic. In the long run, NHibernate is the best choice for a .NET ORM right now. I wrote a lot more on choosing a .NET ORM here:
.NET and ORM - Decisions, decisions
In the end, there is no reason you can't have two or more different data layer technologies in the same application. There are good reasons not to do this however and so it should be avoided if at all possible.
Also, here's a compelling write-up against using stored procedures:
Stored procedures are bad, m'kay?