In file a.lst:
in1.a in1.b > out1.a 2> out1.b
in2.a in2.b > out2.a 2> out2.b
In do.sh:
CLI=$(sed -n -e "1 p" a.lst)
perl a.pl $CLI
I want to run like perl a.pl in1.a in1.b > out1.a 2> out1.b, how can I make it work ?
views:
186answers:
3
+1
A:
I can't test it here, but it looks like using eval will work, so:
eval perl a.pl $CLI
Peter van der Heijden
2009-10-20 07:05:08
It works. Thanks.
Galaxy
2009-10-20 07:12:36
A:
cat a.lst | while read all
do
eval perl a.pl $all
done
to evaluate the redirect part just add eval as posted by someone earlier
Abu Aqil
2009-10-20 07:12:27
Your answer reads each line. The OP apparently only wants the first line (`sed "1 p"`). Also, if you are reading all the lines, instead of `cat|while`, you should use `done < a.lst`
Dennis Williamson
2009-10-20 08:21:02
This is a job script for Grid Engine Job Array, `#$ -t 1-10` and `SEED=$(sed -n -e "$SGE_TASK_ID p" $SEEDFILE)` just reads each of the 10 lines for `$SEEDFILE`.
Galaxy
2009-10-20 08:29:51
`done < a.lst`, How to write a similar script to this answer from "Abu Aqil" ? Seems `do echo $*;done<a.lst` is wrong.
Galaxy
2009-10-20 08:33:55
A:
If your input file is in a consistent format (always the same number of parameters and the same kind of redirection), you might be able to do this:
CLI=($(head -n 1 a.lst))
perl a.pl "${CLI[0]}" "${CLI[1]}" > "${CLI[3]}" 2> "${CLI[5]}"
If you actually want to do this for each line in a.list:
while read -a CLI
do
perl a.pl "${CLI[0]}" "${CLI[1]}" > "${CLI[3]}" 2> "${CLI[5]}"
done < a.lst
If you want just the first 10 lines of your input file, the last line can be changed to:
done < <(head -n 10 a.lst)
Dennis Williamson
2009-10-20 08:35:55