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There is a list at http://annotation.semanticweb.org/tools/

Have you tried them? Any suggestion?

+1  A: 

The tools on that list are quite diverse. The SHOE thing and annotea are both quite old now, I probably wouldn't bother. Annozilla is a firefox plugin, that can also speak to the annotea server,it may be nicer and more modern, but I have not tried it.

There was another nice firefox extension for annotationgs, I forget exactly what it was, but it may have developed into this: http://www.zotero.org/ Looks interesting either way.

gromgull