In Interface Builder you can specify the simulated User interface elements. In the screenshots above you will notice in the green one you can see the status bar and the red one doesn't have it. You can turn on these elements by setting the properties of the view. Press Command-1 when you have the view selected and you will see a list of simulates ui elements you can add, these include the status bar, navigation controller bar and a few others i cant remember off the top of my head. This will allow you to position your ui elements correctly when you have these other elements on the screen.
The other issue with your view is that it is not the same height. have a look at the dimensions (cant remember exactly which one but its Command-2, 3 or 4 when you have the view selected) it should be 320x480, i reckon yours is 320x460... (20 pixels, the height of the status bar)