Here's a working example I just lifted from my JNI library to resolve a user-queue pointer to test the queue's existence - it copies the queue library and name from a Java byte array (already translated to job CCSID) into native code and uses it. Note the release function calls; these can be changed to copy the native array contents back into the Java byte arrays to move data the other way:
JNIEXPORT jboolean JNICALL Java_com_mycompany_jni400_UserQueue_jniResolve(JNIEnv *jep,jobject thsObj,
jbyteArray queueLibrary,jbyteArray queueName) {
jbyte *lib,*nam;
bool rtn;
thsObj=thsObj;
lib=(*jep)->GetByteArrayElements(jep,queueLibrary,0);
nam=(*jep)->GetByteArrayElements(jep,queueName,0);
rtn=(usrq_resolve((byte*)lib,(byte*)nam)!=NULL);
(*jep)->ReleaseByteArrayElements(jep,queueLibrary,lib,JNI_ABORT); /* abort to not copy back contents */
(*jep)->ReleaseByteArrayElements(jep,queueName ,nam,JNI_ABORT); /* abort to not copy back contents */
if(rtn) { return JNI_TRUE; }
else { return JNI_FALSE; }
}