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Is there a way a developer can automatically upload [doxygen] documentation for his project hosted on github through their API? I didn't find anything on develop.github.com related to this. It would be nice if one could just scp the files or something.

A: 

There is no way, at this time, to access the GitHub wiki via the API. However, there is a much better solution already built into GitHub. Since Doxygen outputs static HTML pages, you can push them to the gh-pages branch of your project and access them at username.github.com/projectname

For more information, http://pages.github.com/.

Jake
I tried that, the problem for me is that now my git repository takes forever to clone, since git clone by default grabs all branches...
jdkoftinoff