Like, let's say I had a tree structure, then I would use, naturally a tree control, since that GUI element maps perfectly to the structure.
But what I have is a graph, potentially too wide to fit in one web page. I can't think of examples of GUIs that really match the structure. Some ideas I have that don't quite fit are, the web itself, with hyperlinks, the browser back button, and the forward button. But that just shows you one node at a time. I would like to display as many nodes as I can, and allow navigation to a new area of the graph. Something like Google maps might be a good model, in that you have full freedom to scroll in any direction.