Every night, Cpanel keeps recompiling MySQL. Here's the output from the logs. I've even tried forcing mysql to reinstall, but still keeps recompiling. MySQL works fine, but this is putting a lot of load on the server, and if it fails to recompile correctly, down goes MySQL, which is not something I'm prepared to wait for.
During the recompile, this error is thrown /usr/bin/ldd: line 161: /lib/ld-linux.so.2: cannot execute binary file
There's also another error log below this one from conman
Running Futex Check/Fix......Done
Updating /scripts...
Sync Source: http://httpupdate.cpanel.net/STABLE-x86_64/Cpanel
Fetching http://httpupdate.cpanel.net/cpanelsync/STABLE-x86_64/Cpanel/.cpanelsync.lock (0)[email protected]
Fetching http://httpupdate.cpanel.net/cpanelsync/STABLE-x86_64/Cpanel/.cpanelsync.bz2 (1)[email protected]%......Done
Sync Source: http://httpupdate.cpanel.net/STABLE-x86_64/scripts
Fetching http://httpupdate.cpanel.net/cpanelsync/STABLE-x86_64/scripts/.cpanelsync.lock (0)[email protected]
Fetching http://httpupdate.cpanel.net/cpanelsync/STABLE-x86_64/scripts/.cpanelsync.bz2 (1)[email protected]%......Done
...Done
Checking for main ip changes......Done
Checking mySQL to ensure we can connect......Done
Sending usage data (if enabled)...Anonymous usage data accepted [250].
...Done
Validating cPanel system users...Homedir: /usr/local/cpanel
...Done
Updating email whitelists......Done
Checking and Repairing System Package Setup......Done
Running Platform Specific Optimizations......Done
Setting up ip startup......Done
Configuring editors......Done
Creating symlinks for common binaries......Done
Setting Clock......Done
Running Env Auto Repair...quota test: check passed (the repquota signal was 0 [ok])
Requesting script ... Done
Auto Repair is running...Running Auto Repair routines
Finished running Auto Repair routines
...Auto Repair is done.
...Done
Running Cleanups...Found hostname to be , which resolves to [IP ADDR]
Hostname Virtual Host is already setup
...Done
Updating services & databases...PHP version file is up to date
Ftp Quota Check v1.7
...Done
Cpanel updates are coming from layer2.cpanel.net
Setting Up Crontab......Done
Setting Up update_db_cache Crontab......Done
Setting Up optimizefs Crontab......Done
Setting Up dcpumon Crontab......Done
Repairing Mailman Permissions......Done
Running Sanity Checks & Notifications......Done
Running Named Checks......Done
Updating FTP Server...Ftp Setup Script Version 6.1
Fetching version information from http://httpupdate.cpanel.net/ftpinstall/version (STABLE)....Fetching http://httpupdate.cpanel.net/ftpinstall/version (0)[email protected]%......Done
Done
This is the pure-ftpd 1.0.27 installer release number 1.tls for platform centos 5.4
pure-ftpd is up to date. Use ftpup --force to force a reinstall
...Done
Updating SMTP (exim) Server...Exim (maildir) Setup Script Version 20.0
**/usr/bin/ldd: line 161: /lib/ld-linux.so.2: cannot execute binary file**
Fetching version information from http://httpupdate.cpanel.net/eximinstall/version (STABLE)....Fetching http://httpupdate.cpanel.net/eximinstall/version (0)[email protected]%......Done
Done
This is the exim 4.69 installer release number 23.1 for platform centos 5.4
exim is up to date. Use eximup --force to force a reinstall
...Done
Updating bandmin...bandmin Setup Script Version 1.0
Fetching version information from http://httpupdate.cpanel.net/bandmininstall/version (STABLE)....Fetching http://httpupdate.cpanel.net/bandmininstall/version (0)[email protected]%......Done
Done
This is the bandmin 1.6.1 installer release number 1 for platform centos 5.4
bandmin is up to date. Use bandminup --force to force a reinstall
...Done
Updating IMAP Server...Dovecot Setup Script Version 1.0
Fetching version information from http://httpupdate.cpanel.net/dovecotinstall/version (STABLE)....Fetching http://httpupdate.cpanel.net/dovecotinstall/version (0)[email protected]%......Done
Done
This is the dovecot 1.1.19 installer release number 1cp for platform centos 5.4
dovecot is up to date. Use dovecotup --force to force a reinstall
Install Complete
...Done
Updating DNS Server...NSD is not the configured local nameserver.
Use /scripts/setupnameserver to change this setting.
...Done
Updating system packages...Loaded plugins: fastestmirror
Loading mirror speeds from cached hostfile
* addons: mirror.ox.ac.uk
* base: mirror.ox.ac.uk
* extras: mirror.ox.ac.uk
* updates: mirror.ox.ac.uk
Excluding Packages in global exclude list
Finished
Setting up Update Process
No Packages marked for Update
...Done
Restoring compiler permissions...Compilers are disabled for unprivileged users.
...Done
Repairing mysql......Done
Optimizing Databases......Done
Updating MySQL Server...MySQL Setup Script Version 7.0
/lib/libc.so.6: /lib/libc.so.6: cannot execute binary file
Old glibc library. Rpms may be built from source at /scripts/mysqlup line 108.
Fetching http://httpupdate.cpanel.net/mysqlinstall/STABLE/cPpkgversion (0)[email protected]%......Done
Loaded cPPkgs::MySQL ok!
Resolved Package to source rpm: MySQL-5.0.89-0.src.rpm
Fetching http://httpupdate.cpanel.net/mysqlinstall/MySQL-5.0.89-0.src.rpm (0)[email protected]%...2%...3%...4%...5%...6%...7%...8%...9%...10%...11%...12%...13%...14%...15%...16%...17%...18%...19%...20%...21%...22%...23%...24%...25%...26%...27%...28%...29%...30%...31%...32%...33%...34%...35%...36%...37%...38%...39%...40%...41%...42%...43%...44%...45%...46%...47%...48%...49%...50%...51%...52%...53%...54%...55%...56%...57%...58%...59%...60%...61%...62%...63%...64%...65%...66%...67%...68%...69%...70%...71%...72%...73%...74%...75%...76%...77%...78%...79%...80%...81%...82%...83%...84%...85%...86%...87%...88%...89%...90%...91%...92%...93%...94%...95%...96%...97%...98%...99%...100%......Done
Loaded plugins: fastestmirror
Loading mirror speeds from cached hostfile
* addons: mirror.ox.ac.uk
* base: mirror.ox.ac.uk
* extras: mirror.ox.ac.uk
* updates: mirror.ox.ac.uk
Excluding Packages in global exclude list
Finished
Setting up Install Process
Package rpm-4.4.2.3-18.el5.x86_64 already installed and latest version
Package rpm-build-4.4.2.3-18.el5.x86_64 already installed and latest version
No package db-devel available.
Package gdbm-devel-1.8.0-26.2.1.x86_64 already installed and latest version
Package gdbm-devel-1.8.0-26.2.1.i386 already installed and latest version
No package db1-devel available.
Package compat-db-4.2.52-5.1.x86_64 already installed and latest version
Package compat-db-4.2.52-5.1.i386 already installed and latest version
Package libtool-1.5.22-7.el5_4.x86_64 already installed and latest version
Package libtool-ltdl-1.5.22-7.el5_4.x86_64 already installed and latest version
Package libtool-ltdl-1.5.22-7.el5_4.i386 already installed and latest version
Package gcc-c++-4.1.2-46.el5_4.2.x86_64 already installed and latest version
Package expect-5.43.0-5.1.x86_64 already installed and latest version
Package expect-5.43.0-5.1.i386 already installed and latest version
No package gcc-c++-devel available.
No package ndbm-devel available.
Package zlib-1.2.3-3.x86_64 already installed and latest version
Package zlib-1.2.3-3.i386 already installed and latest version
Package zlib-devel-1.2.3-3.x86_64 already installed and latest version
Package zlib-devel-1.2.3-3.i386 already installed and latest version
Nothing to do
Building RPM ......... [repeated lots of times]
Stored rpm for future use/reversion (MySQL-server) as /home/cpanel-rpmstor/MySQL-server/64/centos/5.4/MySQL-server-5.0.89-0.glibc23.x86_64.rpm
Stored rpm for future use/reversion (MySQL-client) as /home/cpanel-rpmstor/MySQL-client/64/centos/5.4/MySQL-client-5.0.89-0.glibc23.x86_64.rpm
Stored rpm for future use/reversion (MySQL-bench) as /home/cpanel-rpmstor/MySQL-bench/64/centos/5.4/MySQL-bench-5.0.89-0.glibc23.x86_64.rpm
Stored rpm for future use/reversion (MySQL-devel) as /home/cpanel-rpmstor/MySQL-devel/64/centos/5.4/MySQL-devel-5.0.89-0.glibc23.x86_64.rpm
Stored rpm for future use/reversion (MySQL-shared) as /home/cpanel-rpmstor/MySQL-shared/64/centos/5.4/MySQL-shared-5.0.89-0.glibc23.x86_64.rpm
Preparing... ##################################################
MySQL-shared ##################################################
Giving mysqld a couple of seconds to exit nicely
MySQL-server ##################################################
PLEASE REMEMBER TO SET A PASSWORD FOR THE MySQL root USER !
To do so, start the server, then issue the following commands:
/usr/bin/mysqladmin -u root password 'pass'
/usr/bin/mysqladmin -u root -h domain password 'pass'
Alternatively you can run:
/usr/bin/mysql_secure_installation
which will also give you the option of removing the test
databases and anonymous user created by default. This is
strongly recommended for production servers.
See the manual for more instructions.
Please report any problems with the /usr/bin/mysqlbug script!
The latest information about MySQL is available on the web at
http://www.mysql.com
Support MySQL by buying support/licenses at http://shop.mysql.com
Starting MySQL.[ OK ]
Thank you for installing the MySQL Community Server! For Production
systems, we recommend MySQL Enterprise, which contains enterprise-ready
software, intelligent advisory services, and full production support with
scheduled service packs and more. Visit www.mysql.com/enterprise for more
information.
MySQL-client ##################################################
MySQL-bench ##################################################
MySQL-devel ##################################################
/usr/bin/ldd: line 161: /lib/ld-linux.so.2: cannot execute binary file
Install Complete
...Done
Installing system packages and perl modules...Loaded plugins: fastestmirror
Loading mirror speeds from cached hostfile
* addons: mirror.ox.ac.uk
* base: mirror.ox.ac.uk
* extras: mirror.ox.ac.uk
* updates: mirror.ox.ac.uk
Excluding Packages in global exclude list
Finished
Setting up Install Process
Package 30:bind-9.3.6-4.P1.el5_4.2.x86_64 already installed and latest version
Package 30:bind-devel-9.3.6-4.P1.el5_4.2.x86_64 already installed and latest version
Package 30:bind-devel-9.3.6-4.P1.el5_4.2.i386 already installed and latest version
Package 30:bind-libs-9.3.6-4.P1.el5_4.2.x86_64 already installed and latest version
Package 30:bind-libs-9.3.6-4.P1.el5_4.2.i386 already installed and latest version
Package 30:bind-utils-9.3.6-4.P1.el5_4.2.x86_64 already installed and latest version
Package bzip2-1.0.3-4.el5_2.x86_64 already installed and latest version
Package crontabs-1.10-8.noarch already installed and latest version
Package expect-5.43.0-5.1.x86_64 already installed and latest version
Package expect-5.43.0-5.1.i386 already installed and latest version
Package freetype-2.2.1-21.el5_3.x86_64 already installed and latest version
Package freetype-2.2.1-21.el5_3.i386 already installed and latest version
Package freetype-devel-2.2.1-21.el5_3.x86_64 already installed and latest version
Package freetype-devel-2.2.1-21.el5_3.i386 already installed and latest version
Package gcc-4.1.2-46.el5_4.2.x86_64 already installed and latest version
Package gcc-c++-4.1.2-46.el5_4.2.x86_64 already installed and latest version
Package gd-2.0.33-9.4.el5_4.2.x86_64 already installed and latest version
Package gd-2.0.33-9.4.el5_4.2.i386 already installed and latest version
Package gd-devel-2.0.33-9.4.el5_4.2.x86_64 already installed and latest version
Package gd-devel-2.0.33-9.4.el5_4.2.i386 already installed and latest version
Package gd-progs-2.0.33-9.4.el5_4.2.x86_64 already installed and latest version
No package gd-utils available.
Package gettext-0.14.6-4.el5.x86_64 already installed and latest version
Package gettext-0.14.6-4.el5.i386 already installed and latest version
Package gettext-devel-0.14.6-4.el5.x86_64 already installed and latest version
Package gettext-devel-0.14.6-4.el5.i386 already installed and latest version
Package glibc-devel-2.5-42.el5_4.3.x86_64 already installed and latest version
Package glibc-devel-2.5-42.el5_4.3.i386 already installed and latest version
Package gnupg-1.4.5-14.x86_64 already installed and latest version
Package libgcc-4.1.2-46.el5_4.2.x86_64 already installed and latest version
Package libgcc-4.1.2-46.el5_4.2.i386 already installed and latest version
No package libgd1 available.
No package libgd1-devel available.
No package libmysqlclient10-dev available.
No package libxml available.
No package libxml-devel available.
Package libstdc++-4.1.2-46.el5_4.2.x86_64 already installed and latest version
Package libstdc++-4.1.2-46.el5_4.2.i386 already installed and latest version
Package libstdc++-devel-4.1.2-46.el5_4.2.x86_64 already installed and latest version
Package libstdc++-devel-4.1.2-46.el5_4.2.i386 already installed and latest version
Package which-2.16-7.x86_64 already installed and latest version
Package lsof-4.78-3.x86_64 already installed and latest version
Package sysstat-7.0.2-3.el5.x86_64 already installed and latest version
Package libxml2-2.6.26-2.1.2.8.x86_64 already installed and latest version
Package libxml2-2.6.26-2.1.2.8.i386 already installed and latest version
Package libxml2-devel-2.6.26-2.1.2.8.x86_64 already installed and latest version
Package libxml2-devel-2.6.26-2.1.2.8.i386 already installed and latest version
Package gamin-0.1.7-8.el5.x86_64 already installed and latest version
Package gamin-0.1.7-8.el5.i386 already installed and latest version
Package gamin-devel-0.1.7-8.el5.x86_64 already installed and latest version
Package gamin-devel-0.1.7-8.el5.i386 already installed and latest version
Package lynx-2.8.5-28.1.el5_2.1.x86_64 already installed and latest version
Package openssh-4.3p2-36.el5_4.4.x86_64 already installed and latest version
Package openssh-clients-4.3p2-36.el5_4.4.x86_64 already installed and latest version
Package openssh-server-4.3p2-36.el5_4.4.x86_64 already installed and latest version
Package openssl-0.9.8e-12.el5_4.1.x86_64 already installed and latest version
Package openssl-0.9.8e-12.el5_4.1.i686 already installed and latest version
Package openssl-devel-0.9.8e-12.el5_4.1.x86_64 already installed and latest version
Package openssl-devel-0.9.8e-12.el5_4.1.i386 already installed and latest version
No package openssl-misc available.
No package perl-CPAN available.
Package sharutils-4.6.1-2.x86_64 already installed and latest version
No package tcp_wrappers-devel available.
No package ucd-snmp available.
No package ucd-snmp-devel available.
No package ucd-snmp-utils available.
Package wget-1.11.4-2.el5_4.1.x86_64 already installed and latest version
Package urw-fonts-2.3-6.1.1.noarch already installed and latest version
No package XFree86-devel available.
No package XFree86-libs available.
Package libXpm-devel-3.5.5-3.x86_64 already installed and latest version
Package libXpm-devel-3.5.5-3.i386 already installed and latest version
Package libX11-devel-1.0.3-11.el5.x86_64 already installed and latest version
Package libX11-devel-1.0.3-11.el5.i386 already installed and latest version
Package 4:vixie-cron-4.1-77.el5_4.1.x86_64 already installed and latest version
Package libstdc++-devel-4.1.2-46.el5_4.2.x86_64 already installed and latest version
Package glibc-devel-2.5-42.el5_4.3.x86_64 already installed and latest version
Nothing to do
...Done
Configuring Frontpage...initfpsuexec: using apache 1.x support
...Done
Fetching Installer...Ping:9 (ticks) Testing connection speed to 216.38.56.98 using pureperl...(46872.22 bytes/s)...Done
5 usable mirrors located
Fetching http://layer2.cpanel.net/STABLE-installer/ (0)[email protected]%......Done
...Done
Running Installer...Requested cPanel Tree: STABLE
Fetching http://httpupdate.cpanel.net/cpanelsync/STABLE-x86_64/cpanel/version (0)[email protected]%......Done
Using mail permissions style: NEW
Versions Match! (11.25.0-STABLE_43473). You are running the latest STABLE-x86_64.
...Done
Ensuring locale databases...Updating 'ar' locale ...
... 'ar' complete.
Updating 'bn' locale ...
... 'bn' complete.
Updating 'de' locale ...
... 'de' complete.
Updating 'en' locale ...
... 'en' complete.
Updating 'es' locale ...
... 'es' complete.
Updating 'fr' locale ...
... 'fr' complete.
Updating 'hi' locale ...
... 'hi' complete.
Updating 'ja' locale ...
... 'ja' complete.
Updating 'nl' locale ...
... 'nl' complete.
Updating 'pt' locale ...
... 'pt' complete.
Updating 'pt_br' locale ...
... 'pt_br' complete.
Updating 'ru' locale ...
... 'ru' complete.
Updating 'zh' locale ...
... 'zh' complete.
...Done
Updating Addons...Updating addon type:modules addon:cronconfig version:0.4.1.......Done
...Done
Running postinstall scripts...Loading Symbol Table... /usr/local/cpanel/etc/sym/BitchX.sym ..Done
Loading Symbol Table... /usr/local/cpanel/etc/sym/bnc.sym ..Done
Loading Symbol Table... /usr/local/cpanel/etc/sym/eggdrop.sym ..Done
Loading Symbol Table... /usr/local/cpanel/etc/sym/generic-sniffers.sym ..Done
Loading Symbol Table... /usr/local/cpanel/etc/sym/guardservices.sym ..Done
Loading Symbol Table... /usr/local/cpanel/etc/sym/ircd.sym ..Done
Loading Symbol Table... /usr/local/cpanel/etc/sym/psyBNC.sym ..Done
Loading Symbol Table... /usr/local/cpanel/etc/sym/ptlink.sym ..Done
Loading Symbol Table... /usr/local/cpanel/etc/sym/services.sym ..Done
Kill Proc Enabled
Added Contact
Scanning for new mail senders.....Done
Scanning suexec_log...Done
...Done
Conman cronlog
/etc/cron.daily/logrotate:
error: conman:21 error verifying olddir path /var/log/conman.old/: No such file or directory
/etc/cron.daily/prelink:
/usr/bin/ldd: line 161: /lib/ld-linux.so.2: cannot execute binary file
Thanks in advance for any help.