base2.css
is just a bunch of styles specifically for the jQuery UI site in general, you'll find it's included on the documentation pages, bug tracker, support center, etc. It isn't really theme-roller specific at all, this css is though.
What you want for themeroller themes is this css: http://jquery-ui.googlecode.com/svn/tags/latest/themes/base/jquery-ui.css
That css file is the base grey theme, then you customize on top of it. However, themeroller packages everything you need in a single theme, so you don't include the base theme then another stylesheet with certain customizations (though you could!), rather you include the single .css
file it generates for you, which includes all the styles.