connection of MATLAB 7.0 and MYSQL

Question

I want to connect MATLAB with MYSQL.I dont know the procedure.In MATLAB help it says about some drivers which confuses me alot.Can someone please guide me!please tell me the complete process.I shall be very very thankful!!!

Answer 1

I use JDBC to connect from MATLAB to mySQL database. Works seamlessly.

• First download JDBC driver for mySQL from here: http://www.mysql.com/downloads/connector/j/
• Unpack mysql-connector-java-5.1.13-bin.jar file from the archive into a folder
• In the beginning of your script add the path to this jar file, then you can connect to a database and so on.

Here is an example of connecting to and querying public human genome database:

javaaddpath('h:\Documents\MATLAB\myJavaClasses\mysql-connector-java-5.1.12-bin.jar')
% connection parameteres
host = 'genome-mysql.cse.ucsc.edu';
user = 'genome';
password = '';
dbName = 'hg18'; 
% JDBC parameters
jdbcString = sprintf('jdbc:mysql://%s/%s', host, dbName);
jdbcDriver = 'com.mysql.jdbc.Driver';

% Create the database connection object
conn = database(dbName, user , password, jdbcDriver, jdbcString);

gene = 'NF1';
if isconnection(conn) % check to make sure that we successfully connected
    qry = sprintf('SELECT geneName, chrom, txStart, txEnd FROM refFlat WHERE geneName=''%s''',gene);
    rs = fetch(exec(conn, qry));
    rsdata = get(rs, 'Data');
end