Late answer... but I feel I should share some of the latest stuff available.
Is compatibility and the frequently
changing framework an issue to worry
about?
No. But it sounds like you are a beginner with Rails -- anyone starting a big e-commerce project should consider sticking with a framework they are already comfortable with.
If you definitely want a Rails app and your site is primarily an e-commerce shopping site, I recommend you look at Spree (http://spreecommerce.com/).
If your site is primarily a web application with a small purchasing component, consider using ActiveMerchant directly to hack together your own simple shopping page.
If you are making a primarily e-commerce shopping site, you would do well to at least consider non-Rails solutions. There are so many options for standalone web stores, shopping carts linked to CMS apps like WordPress and Drupal, third-party services for a fee (e.g., Shopify for shops, Chargify for subscription services) and many of them can be customized with minimal coding.
Rails is up to the task, but if you aren't already a "Rails guy" there's no particular reason to choose it for a new e-commerce app.