I'm using following structure of my development environment setup and I guess this is what you're looking for.
Below is example.
Server name: SRV01
On that server create folder for ex. AX5 and share that folder.
Folder structure:
AX5
--Application
----Appl
------Application_1 <- here is your *.aod file(-s)
------Application_2 <- here is your *.aod file(-s)
--AXC
------Application_1
-------- usr.axc configuration file <- save your configuration here
-------- cus.axc configuration file <- save your configuration here
------Application_2
-------- *.axc configuration file <- save your configuration here
--Client <- here is your Ax32.exe.
--Server <- here is your Ax32Serv.exe
--StartUp
------Application_1
-------- usr.bat with one line. In this case this would be \\SRV01\AX5\Client\Bin\Ax32.exe \\SRV01\AX5\AXC\Application_1\usr.axc
-------- cus.bat with one line. In this case this would be \\SRV01\AX5\Client\Bin\Ax32.exe \\SRV01\AX5\AXC\Application_1\cus.axc
------Application_2
-------- *.bat with one line. In this case this would be \\SRV01\AX5\Client\Bin\Ax32.exe \\SRV01\AX5\AXC\Application_1\*.axc
And here is example of *.axc file
Configuration export file for Dynamics
Formatversion: 1
Configuration: usr.axc
logdir,Text,C:\Users\Public\Microsoft\Dynamics Ax\Log\ <------------- change this but it's up to you
company,Text,
startupcmd,Text,
extracmdline,Text,
startupmsg,Text,
aos2,Text,AOS_Instance_Name@SRV01:2712 <------------- change this
aosencryption,Text,1
xppdebug,Text,1
globalbreakpoints,Int,1
aol,Text,usr
aolcode,Text,
traceeventsenabled,Text,1
tracestart,Int,0
tracexppmethodcalldepth,Text,3
client,Text,thin
_clientmode,Int,0
sql,Int,1
native,Int,0
hassqlpwd,Int,0
localappldoc,Int,0
localsysdoc,Int,0
applshare,Int,1
applexclusive,Int,0
hascompwd,Int,0
hasserveridletimeout,Int,0
allowunauth,Int,0
windowsauth,Text,1
sqloraclefirstrowsfix,Text,0
hasocipwd,Int,0
dbunicodeenabled,Text,1
cachesynctime,Text,
caslevel,Text,enable
language,Text,
_clientadname,Text,
aos,Text,
application,Text,
bindir,Text,\\SRV01\AX5\Client\Bin <------------- change this
broadcast,Text,
compwd,Text,
connectionidletimeout,Text,
createdsn,Text,
database,Text,AXDB <------------- change this
datadir,Text,\\SRV01\AX5\Client\Data <------------- change this
dbcli,Text,odbc
dbserver,Text,SRV01 <------------- change this
directory,Text,\\SRV01\AX5\Client <------------- change this
dsn,Text,
exposeserverprinters,Int,0
fetchahead,Text,
haswarnings,Int,0
hint,Text,
ignoredatasourceindex,Text,0
installationlanguage,Text,EN-US
internet,Text,SRV01
log,Text,
newconnectionretrycount,Text,
newconnectionretrydelayms,Text,
ociconnectservice,Text,1
ocidbid,Text,
ocihost,Text,
ociservice,Text,
ocitcpipport,Text,1521
opencursors,Text,
port,Text,
preloadthresholdmsec,Text,
preloadthresholdrecords,Text,
querytimelimit,Text,
retry,Text,
serveridletimeout,Text,
servermask,Text,2712 <------------- change this
sqlbuffer,Text,
sqlcomplexliterals,Text,1
sqlformliterals,Text,1
sqlpwd,Text,
sqltrace,Text,0
sqluser,Text,
user,Text,
warnings,Text,
tracemaxfilesize,Text,10000
tracebuffersize,Text,1024
tracemaxbuffers,Text,120
traceminbuffers,Text,30
traceallowclient,Int,0
Important note: install AX 2009 client on each client PC. While installation you'll be asked to state an AOS - state any value. This locally installed AX 2009 client needed as it use several additional assemblies which aren't in GAC.
Finally - how to start AX? Simply run a *.bat file.
Hope I was clear enough and do hope I understood what you were looking for ))