While JavaScript libraries get a lot of programming eyeballs and attention, GWT has the advantage of being able to doing some hideously not-human-readable things to the generated JavaScript code per browser for the sake of performance.
In theory, anything the GWT compiler does, the JavaScript writers should be able to do. But in practice the JS library writers have to maintain their code. Look at the jQuery code. It's obviously not optimized per browser. With some effort, I could take jQuery and target it for Safari only, saving a lot of code and speeding up what remains.
It's an ongoing battle. The JavaScript libraries compete against each other, getting faster all the time. GWT gets better and better, and has the advantage of being able to write ugly unmaintainable JavaScript per browser.
For any given task, you'll have to test to see where the arms race currently places us, and it'll likely vary between browsers.