Most (all?) of Django is available in GAE, so your main task is to avoid basing your designs around a reliance on anything from Django or the Python standard libraries which is not available on GAE.
You've identified the glaring difference, which is the database, so I'll assume you're on top of that. Another difference is the tie-in to Google Accounts and hence that if you want, you can do a fair amount of access control through the app.yaml file rather than in code. You don't have to use any of that, though, so if you don't envisage switching to Google Accounts when you switch to GAE, no problem.
I think the differences in the standard libraries can mostly be deduced from the fact that GAE has no I/O and no C-accelerated libraries unless explicitly stated, and my experience so far is that things I've expected to be there, have been there. I don't know Django and haven't used it on GAE (apart from templates), so I can't comment on that.
Personally I probably wouldn't target LAMP (where P = Django) with the intention of migrating to GAE later. I'd develop for both together, and try to ensure if possible that the differences are kept to the very top (configuration) and the very bottom (data model). The GAE version doesn't necessarily have to be perfect, as long as you know how to make it perfect should you need it.
It's not guaranteed that this is faster than writing and then porting, but my guess is it normally will be. The easiest way to spot any differences is to run the code, rather than relying on not missing anything in the GAE docs, so you'll likely save some mistakes that need to be unpicked. The Python SDK is a fairly good approximation to the real App Engine, so all or most of your tests can be run locally most of the time.
Of course if you eventually decide not to port then you've done unnecessary work, so you have to think about the probability of that happening, and whether you'd consider the GAE development to be a waste of your time if it's not needed.