It appears JID3 will do the trick. It doesn't have any restrictions on extension.
http://jid3.blinkenlights.org/
Now hopefully someone finds this open-source project a designer!
Here is an example of using it with several different file formats:
public class JITExample {
private static MediaFile audioFile;
public static void main(String... megaThrustersAreGo) {
//File file = new File("/home/rhigdon/Desktop/project-voltron/test-files/video.mp4");
//File file = new File("/home/rhigdon/Desktop/project-voltron/test-files/movGetOutTheWay_iPhone_Cellular_1.3gp");
File file = new File("/home/rhigdon/Desktop/project-voltron/test-files/movGetOutTheWay_HD_WMV_720p_1.wmv");
//Entagged Soltuion
audioFile = new MP3File(file);
try {
ID3V2_3_0Tag tag = new ID3V2_3_0Tag();
tag.setArtist("Ryan Higdon");
tag.setAlbum("Ryan's Funky Beats");
audioFile.setID3Tag(tag);
audioFile.sync();
for (ID3Tag eachTag : audioFile.getTags()) {
System.out.println(eachTag.toString());
}
} catch (ID3Exception e) {
e.printStackTrace();
System.out.println("something bad happened");
}
}
}