I would interpret it another way. It's not that threads are evil, it's that side-effects are evil in a multithreaded context (which is a lot less catchy to say).
A side effect in this context is something that affects state shared by more than one thread, be it global or just shared. I recently wrote a review of Spring Batch and one of the code snippets used is:
private static Map<Long, JobExecution> executionsById = TransactionAwareProxyFactory.createTransactionalMap();
private static long currentId = 0;
public void saveJobExecution(JobExecution jobExecution) {
Assert.isTrue(jobExecution.getId() == null);
Long newId = currentId++;
jobExecution.setId(newId);
jobExecution.incrementVersion();
executionsById.put(newId, copy(jobExecution));
}
Now there are at least three serious threading issues in less than 10 lines of code here. An example of a side effect in this context would be updating the currentId static variable.
Functional programming (Haskell, Scheme, Ocaml, Lisp, others) tend to espouse "pure" functions. A pure function is one with no side effects. Many imperative languages (eg Java, C#) also encourage the use of immutable objects (an immutable object is one whose state cannot change once created).
The reason for (or at least the effect of) both of these things is largely the same: they make multithreaded code much easier. A pure function by definition is threadsafe. An immutable object by definition is threadsafe.
The advantage processes have is that there is less shared state (generally). In traditional UNIX C programming, doing a fork() to create a new process would result in shared process state and this was used as a means of IPC (inter-process communication) but generally that state is replaced (with exec()) with something else.
But threads are much cheaper to create and destroy and they take less system resources (in fact, the operating itself may have no concept of threads yet you can still create multithreaded programs). These are called green threads.