When running all my tests in Eclipse (Eclipse 3.4 'Ganymede'), one test is listed under "Unrooted Tests". I'm using Junit 3.8 and this particular test extends TestCase. I do not see any difference between this test and the other tests. I don't remember seeing this occur in Eclipse 3.3 (Europa).
Clarification:
We haven't moved to JUnit 4.0 yet, so we are not using annotations. I also googled and it seemed like most people were having issues with JUnit 4, but I did not see any solutions. At this point the test passes both locally and in CruiseControl so I'm not overly concerned, but curious.
When I first saw this, though, it was on a failing test that only failed when run with other tests. This led me down the rabbit hole looking for a solution to the "Unrooted" issue that I never found. Eventually I found the culprit in another test that was not properly tearing down.
I agree, it does seem like an Eclipse issue.