This solution may not be optimal or pretty, but it works. It reads in an input file line by line, writing each line out to a temporary output file. Whenever it encounters a line that matches what you are looking for, it skips writing that one out. It then renames the output file. I have omitted error handling, closing of readers/writers, etc. from the example. I also assume there is no leading or trailing whitespace in the line you are looking for. Change the code around trim() as needed so you can find a match.
File inputFile = new File("myFile.txt");
File tempFile = new File("myTempFile.txt");
BufferedReader reader = new BufferedReader(new FileReader(inputFile));
BufferedWriter writer = new BufferedWriter(new FileWriter(tempFile));
String lineToRemove = "bbb";
String currentLine;
while((currentLine = reader.readLine()) != null) {
// trim newline when comparing with lineToRemove
String trimmedLine = currentLine.trim();
if(trimmedLine.equals(lineToRemove)) continue;
writer.write(currentLine);
}
boolean successful = tempFile.renameTo(inputFile);