Please look at these two attempts:
http://3wcloud-com-provisioning-qa.appspot.com/testDijitLayout?menuStyle=dijitTest1
http://3wcloud-com-provisioning-qa.appspot.com/testDijitLayout?menuStyle=dijitTest2
Test1 doesn't show the body, but the header is correct. Test2 shows the body, but the heading/banner is behind the dojo components.
The only difference is that in Test2, I tried to wrap the AccordianContainer and the body container with another generic container:
<div dojoType="dijit.layout.ContentPane" id="bodyContainer">
I found that when the header was totally outside of the Dojo containers, then the spacing/paging/etc... was just a little bit off. So my assumption was that the whole page should be in the Dojo containers.
I'm trying to come up with the proper layout to show the header and the body. I think you can see the structure from the "view source" of the pages.
Thanks, Neal Walters