Add the error to a hidden list with that users name. Set the visibility on the list (for users) to only read/write their own values. Then use a custom web part or FlexListViewer to view the contents of that list and display it to the user. Once they acknowledge that error, remove it from the list.
If necessary, you can add a different workflow action on that message list, that says pause for 2 days and then email. Whatever, depending on your requirements.
Otherwise you can have a custom db table that you use for pretty much the same thing, this way sharepoint does most of the work for you.
Update This can be packaged up as a feature and deployed to each site as needed. The strengths of this approach (adding a list item to a list, querying, alerting a user, and emailing a user) are all built into the sharepoint itself. In this case you can focus on your custom logic only, while letting sharepoint focus on the implementation details.