Given the following List:
val l = List(List(1, 2, 3), List(4, 5), List(6, 7, 8))
If I try to transpose it, Scala will throw the following error:
scala> List.transpose(l)
java.util.NoSuchElementException: head of empty list
    at scala.Nil$.head(List.scala:1365)
    at scala.Nil$.head(List.scala:1362)
    at scala.List$$anonfun$transpose$1.apply(List.scala:417)
    at scala.List$$anonfun$transpose$1.apply(List.scala:417)
    at scala.List.map(List.scala:812)
    at scala.List$.transpose(List.scala:417)
    at .<init>(<console>:6)
    at .<clinit>(<console>)
    at RequestResult...
This is because List.transpose assumes equal-length lists and so uses the head method:
def transpose[A](xss: List[List[A]]): List[List[A]] = {
  val buf = new ListBuffer[List[A]]
  var yss = xss
  while (!yss.head.isEmpty) {
    buf += (yss map (_.head))
    yss = (yss map (_.tail))
  }
  buf.toList
}
I would like to get the following:
List(List(1, 4, 6), List(2, 5, 7), List(3, 8))
Is writing my own version of transpose the best way to do this? This is what I came up with:
def myTranspose[A](xss: List[List[A]]): List[List[A]] = {
  val buf = new ListBuffer[List[A]]
  var yss = xss
  while (!yss.head.isEmpty) {
    buf += (yss filter (!_.isEmpty) map (_.head))
    yss = (yss filter (!_.isEmpty) map (_.tail))
  }
  buf.toList
}
Update: I was interested in comparing the speed of the different solutions offered here, so I put together the following little benchmark:
import scala.testing.Benchmark
import scala.collection.mutable.ListBuffer
trait Transpose extends Benchmark {
  def transpose[Int](xss: List[List[Int]]): List[List[Int]] = Nil
  val list: List[List[Int]] = List(List(1,2,3), Nil, List(4,5,99,100), List(6,7,8))
  def run = {
    val l = transpose(list)
    println(l)
    l
  }
}
object PRTranspose extends Transpose {
  override def transpose[Int](xss: List[List[Int]]): List[List[Int]] = {
    val buf = new ListBuffer[List[Int]]
    var yss = xss
    while (!yss.head.isEmpty) {
      buf += (yss filter (!_.isEmpty) map (_.head))
      yss = (yss filter (!_.isEmpty) map (_.tail))
    }
    buf.toList
  }
}
object ACTranspose extends Transpose {
  override def transpose[Int](xss: List[List[Int]]): List[List[Int]] = {
    val b = new ListBuffer[List[Int]]
    var y = xss filter (!_.isEmpty)
    while (!y.isEmpty) {
      b += y map (_.head)
      y = y map (_.tail) filter (!_.isEmpty)
    }
    b.toList
  }
}
object ETranspose extends Transpose {
  override def transpose[Int](xss: List[List[Int]]): List[List[Int]] = xss.filter(!_.isEmpty) match {    
    case Nil => Nil
    case ys: List[List[Int]] => ys.map{ _.head }::transpose(ys.map{ _.tail })
  }
}
My commands were:
scala PFTranspose 5 out.log
scala ACTranspose 5 out.log
scala ETranspose 5 out.log
My results were:
PRTranspose$            10              0               1               1               0
ACTranspose$            9               2               0               0               0
ETranspose$             9               3               2               3               1