I don't think there are any 64-bit versions of Visual Studio available. This makes answering this question easy: choose 32-bit Visual Studio.
This doesn't prevent you from actually compiling 64-bit applications if you choose (i.e. need) to do so, however. You'll need to compile Qt yourself to generate the 64-bit libraries, but other than that things should be fairly straightforward.
Now, on the other hand, if you don't need to develop 64-bit Windows applications (you probably don't), you can just use the officially provided compiled 32-bit Qt libraries for VS2008 and save yourself multiple hours building Qt. I've experienced no difficulties myself using 32-bit Qt on 64-bit Windows with Visual Studio 2008.