Highlighting specific values in R plot

Question

In R (statistical computing environment) I would like on a generic plot, with time on the x-axis, highlight some specific years.

How can I bestly do this? My idea is for example a light yellow bar for the highlighted years, behind the plot of course.

The plot code I have now:

pdf("temperature_imfs_big_interm5.pdf", width=6, height=8);
par(mfrow=c(temperature$bigEmdIm5$nimf+1,1), mar=c(2,1,2,1))
for(i in 1:temperature$bigEmdIm5$nimf) {
    plot(timeline$big, temperature$bigEmdIm5$imf[,i], type="l", xlab="", ylab="", ylim=range(temperature$bigEmdIm5$imf[,i]), axes=FALSE, main=paste(i, "-th IMF", sep=""))#; abline(h=0)
  axis.POSIXct(side=1, at=tickpos$big)
}
plot(timeline$big, temperature$bigEmdIm5$residue, xlab="", ylab="", axes=FALSE, main="residue", type="l")
axis.POSIXct(side=1, at=tickpos$big)
dev.off();

Where temperature$bigEmdIm5 is the output of emperical mode decompostion. The data is in months, so I would like to higlight 01/1950 until 12/1950 for example.

Answer 1

You can use the chartSeries() function in quantmod with an xts timeSeries and the addTA() function to add the background highlighting:

addTA(xts(rep(TRUE,length(times)), times), on=-1, col="#333333", border=NA)

Answer 2

Using alpha transparency:

x <- seq(as.POSIXct("1949-01-01", tz="GMT"), length=36, by="months")
y <- rnorm(length(x))

plot(x, y, type="l", xaxt="n")
rect(xleft=as.POSIXct("1950-01-01", tz="GMT"),
     xright=as.POSIXct("1950-12-01", tz="GMT"),
     ybottom=-4, ytop=4, col="#123456A0") # use alpha value in col
idx <- seq(1, length(x), by=6)
axis(side=1, at=x[idx], labels=format(x[idx], "%Y-%m"))

or plot highlighted region behind lines:

plot(x, y, type="n", xaxt="n")
rect(xleft=as.POSIXct("1950-01-01", tz="GMT"),
     xright=as.POSIXct("1950-12-01", tz="GMT"),
     ybottom=-4, ytop=4, col="lightblue")
lines(x, y)
idx <- seq(1, length(x), by=6)
axis(side=1, at=x[idx], labels=format(x[idx], "%Y-%m"))
box()

Answer 3

Here is a solution that uses zoo simply because that makes the subsetting easy. You could do the same with standard indexing as well:

## create a long monthly sequence and a sub-sequence
months <- seq( as.Date("1950-01-01"), as.Date("2009-12-12"), by="month")
subset <- seq( as.Date("1970-01-01"), as.Date("1979-12-31"), by="month")

## generate some random values
set.seed(42)
values <- cumsum(rnorm(length(months)))

## plot as a zoo object, overlay a gray background and overplot a line in red
library(zoo)
Z <- zoo(values, months)
plot(Z)
rect(xleft=head(subset,1), xright=tail(subset,1),
     ybottom=par("usr")[3], ytop=par("usr")[4],
     density=NA, col="lightgray")
lines(Z[subset], col='red')
box()

By using par("usr") we avoid the need for explicit values for upper and lower region marks. And the zoo indexing makes finding the start- and endpoints easy. This would work the same way for data in different time resolutions.

Answer 4

Does anyone know how to do the exact same thing in matlab?? I have a time series plot and would like to highlight a certain period in my data.