I have used Jboss and deployment happens by dropping war to deploy folder. But when I set my war project to Tomcat server eclipse claims that it is deploying war, but I cannot see my war in webapps folder. And what url is to my war? In jboss I can add app url to jboss-web.xml, so when I set app path to jboss-web.xml I can find my app from http://localhost:8080/my_app_path_in_jboss_web.xml/.
Using ant simplifies the task. Here is an an ant build.xml file I use to deploy to tomcat 6. (note, I wasn't the origial author of this, but I forget where I got it from)
<project name="provisioning" basedir="." default="usage">
<property file="build.properties"/>
<property name="src.dir" value="src"/>
<property name="web.dir" value="war"/>
<property name="build.dir" value="${web.dir}/WEB-INF/classes"/>
<property name="name" value="provisioning"/>
<path id="master-classpath">
<fileset dir="${web.dir}/WEB-INF/lib">
<include name="*.jar"/>
</fileset>
<!-- We need the servlet API classes: -->
<!-- * for Tomcat 5/6 use servlet-api.jar -->
<!-- * for other app servers - check the docs -->
<fileset dir="${appserver.lib}">
<include name="servlet*.jar"/>
</fileset>
<pathelement path="${build.dir}"/>
</path>
<target name="usage">
<echo message=""/>
<echo message="${name} build file"/>
<echo message="-----------------------------------"/>
<echo message=""/>
<echo message="Available targets are:"/>
<echo message=""/>
<echo message="build --> Build the application"/>
<echo message="deploy --> Deploy application as directory"/>
<echo message="deploywar --> Deploy application as a WAR file"/>
<echo message="install --> Install application in Tomcat"/>
<echo message="reload --> Reload application in Tomcat"/>
<echo message="start --> Start Tomcat application"/>
<echo message="stop --> Stop Tomcat application"/>
<echo message="list --> List Tomcat applications"/>
<echo message=""/>
</target>
<target name="build" description="Compile main source tree java files">
<mkdir dir="${build.dir}"/>
<javac destdir="${build.dir}" source="1.6" target="1.6" debug="true"
deprecation="false" optimize="false" failonerror="true">
<src path="${src.dir}"/>
<classpath refid="master-classpath"/>
</javac>
</target>
<target name="deploy" depends="build" description="Deploy application">
<copy todir="${deploy.path}/${name}" preservelastmodified="true">
<fileset dir="${web.dir}">
<include name="**/*.*"/>
</fileset>
</copy>
</target>
<target name="deploywar" depends="build" description="Deploy application as a WAR file">
<war destfile="${name}.war"
webxml="${web.dir}/WEB-INF/web.xml">
<fileset dir="${web.dir}">
<include name="**/*.*"/>
</fileset>
</war>
<copy todir="${deploy.path}" preservelastmodified="true">
<fileset dir=".">
<include name="*.war"/>
</fileset>
</copy>
</target>
<path id="catalina-ant-classpath">
<!-- We need the Catalina jars for Tomcat -->
<!-- * for other app servers - check the docs -->
<fileset dir="${appserver.lib}">
<include name="catalina-ant.jar"/>
</fileset>
</path>
<taskdef name="install" classname="org.apache.catalina.ant.InstallTask">
<classpath refid="catalina-ant-classpath"/>
</taskdef>
<taskdef name="reload" classname="org.apache.catalina.ant.ReloadTask">
<classpath refid="catalina-ant-classpath"/>
</taskdef>
<taskdef name="list" classname="org.apache.catalina.ant.ListTask">
<classpath refid="catalina-ant-classpath"/>
</taskdef>
<taskdef name="start" classname="org.apache.catalina.ant.StartTask">
<classpath refid="catalina-ant-classpath"/>
</taskdef>
<taskdef name="stop" classname="org.apache.catalina.ant.StopTask">
<classpath refid="catalina-ant-classpath"/>
</taskdef>
<target name="install" description="Install application in Tomcat">
<install url="${tomcat.manager.url}"
username="${tomcat.manager.username}"
password="${tomcat.manager.password}"
path="/${name}"
war="${name}"/>
</target>
<target name="reload" description="Reload application in Tomcat">
<reload url="${tomcat.manager.url}"
username="${tomcat.manager.username}"
password="${tomcat.manager.password}"
path="/${name}"/>
</target>
<target name="start" description="Start Tomcat application">
<start url="${tomcat.manager.url}"
username="${tomcat.manager.username}"
password="${tomcat.manager.password}"
path="/${name}"/>
</target>
<target name="stop" description="Stop Tomcat application">
<stop url="${tomcat.manager.url}"
username="${tomcat.manager.username}"
password="${tomcat.manager.password}"
path="/${name}"/>
</target>
<target name="list" description="List Tomcat applications">
<list url="${tomcat.manager.url}"
username="${tomcat.manager.username}"
password="${tomcat.manager.password}"/>
</target>
I deploy WARs to the webapps dir all the time without issue, probably ~25 times a day. You shouldn't have any problems with that. If you want more control by all means deploy the directory yourself, but this will most likely require a restart.
If I understand correctly, you have configured eclipse to use Tomcat by adding a new Server. In that case eclipse deploys the war file in folder inside your workspace, NOT at $TOMCAT_HOME/webapps. I can't remember the path in eclipse's workspace folder from the top of my head - it should be something that contains tmp, server, ...
You have added Tomcat server in eclipse, eclipse runs the WAR file within your workspace. Eclipse does not use your %TOMCAT_HOME%. To be able to see your WAR in the webapps folder simply drop it in there. You will then be albe to run the war from localhost.