I am not aware PHPDocumentor allows anything like this.
Also, having the same version on all files seems wrong usage to me. The version annotation gives the version for a specific file. If you was to fix a bug in Class A, why would the version of Class B change?
As for inserting the same annotations across multiple documents, I suggest to look into your IDEs templating feature. Usually, you can configure snippets like this and insert them with keyboard shortcuts or when creating new files.
Another option would be to set and replace annotations values when creating the documentation through a deploy script, like Phing or Ant or through a pre-commit hook in your code repository.
EDIT Going through the phpdocumentor manual again, I found this:
The {@inheritdoc} inline tag is used in the DocBlocks of classes, methods and class variables of child classes. phpDocumentor will automatically inherit the @author tag, @version tag, and @copyright tag from a parent class. In addition, if there is no documentation comment present, it will inherit the parent's documentation.
Note that if the {@inheritdoc} inline tag is not present, and a child class is undocumented, the child class will still attempt to inherit documentation from the parent class as is. {@inheritdoc} allows flexibility of where to put documentation from the parent class in a child class's documentation.
It's not exactly what you are looking for, but it's a similar direction.