Pydev Runtime Project Configuration

Question

I have a small tool I'm building in Python under Pydev and I have it organized according to how I'd like my source tree to look in source control:

/project-root
    /branches
        /branch-name
            .project
            .pydevproject
            conf01.conf
            /src
                file01.py
                file02.py

I'm trying to find a way to, upon launching a Run or Debug, to copy the project files to a runtime configuration that might look more like so:

/project-root
    /branches
        /branch-name
            ...
            /src
               ...
            /bin
                /conf
                   conf01.conf
                file01.py
                file01.pyc
                file02.py
                file02.pyc

And automatically resynchronize on each Run or Debug. Is this functionality available?