It's for internal using in Zen theme, read comments please in files for what these.
For example, about template.conditional-styles.inc:
// The code for conditional
stylesheets started out as a patch for
Zen. Now that
// it has been spun
out to its own separate module, It
would be nice to prevent
// code
drift between the Zen implementation
and the
conditional_styles.module,
// so
Zen now includes an exact copy of
conditonal_style module's:
//
conditional_styles.theme.inc,v 1.4
2008/09/14 23:26:47 johnalbin Exp
It will included in template.theme-registry.inc file, via this code:
function _zen_theme(&$existing, $type, $theme, $path) {
// Compute the conditional stylesheets.
if (!module_exists('conditional_styles')) {
include_once './' . drupal_get_path('theme', 'zen') . '/template.conditional-styles.inc';
// _conditional_styles_theme() only needs to be run once.
if ($theme == 'zen') {
_conditional_styles_theme($existing, $type, $theme, $path);
}
}
_zen_theme will included in template.php:
/**
* Implements HOOK_theme().
*/
function zen_theme(&$existing, $type, $theme, $path) {
...
include_once './' . drupal_get_path('theme', 'zen') . '/template.theme-registry.inc';
Read about hook_theme.