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I didn't find any option for that, so I suspect that some views follow the color pattern of the operating system. I'm currently using OS X, and it seems like changing the default background color it's not possible either.

What I'm trying to accomplish is to create a dark background theme, but customization seems only possible on some of the eclipse views.

+1  A: 

As mentioned in "Changing UI color in Eclipse":

Each time you see white or gray color, this is more than likely related to OS system colors.

(that is, for everything which is not an editor or a custom view).

This is likely the case for the navigator view, as reminded in "How to change background of all VIEWS in Eclipse IDE ?"

VonC