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I have the linux alpha version of flex builder installed in /opt/flex and eclipse was installed with synaptic package manager into /usr/lib/eclipse. It looks like eclipse is not aware of flex, since when I attempt to create a new file with eclipse I don't see flex builder as an option.

+1  A: 

In the release notes, found at http://labs.adobe.com/technologies/flex/flexbuilder_linux/releasenotes.html#overview, there is the script file Adobe_Flex_builder.sh in the install directory. Running that should start Eclipse preconfigured with the Flex Builder plugin.

chosenken
Looks like I got it working. I didn't install flex builder properly.
chief