I've added Tomcat in the "Tools > Servers" menu and as you can see it appears in the list of servers:
But when I try to run my project, I cannot select Tomcat! The drop-down with servers is empty. I tried it with NetBeans 6.8 and 6.9 Beta. Any idea?
The end: I've used the wrong archetype so that NetBeans decided that Tomcat is not capable to execute it.