Core data acts as a wrapper for the underlying data store, so it's not really a great idea to begin circumventing core data. Additionally, core data adds additional information to your DB, so directly accessing the DB may (or may in the future) cause problems.
To delete all records via core data, I have the following:
+ (void) deleteAll {
NSManagedObjectContext *managedObjectContext = [(myAppDelegate*)[[UIApplication sharedApplication] delegate] managedObjectContext];
NSFetchRequest *fetchRequest = [[NSFetchRequest alloc] init];
NSEntityDescription *entity = [NSEntityDescription entityForName:[[self class] description] inManagedObjectContext:managedObjectContext];
[fetchRequest setEntity:entity];
NSError *error;
NSArray *items = [managedObjectContext executeFetchRequest:fetchRequest error:&error];
[fetchRequest release];
for (NSManagedObject *managedObject in items) {
[managedObjectContext deleteObject:managedObject];
NSLog(@"%@ object deleted",[[self class] description]);
}
}