I'm using a default Eclipse project file generated for my Android application, and I want to keep it in a targets/ directory (along with other eclipse-specific files) in order to better organize my project structure (I also plan on adding a target for NetBeans).
Simple question, I suppose: Is this possible?
You can define target or output destination by change the output folder. I guess you can do that by change the dir path under Property of the Android project.
If you want to reorganize all your Eclipse projects, you can create a new workplace (Files/Switch workplace) and start creating new projects from now on.