I think you should not consider any specific parser implementation. Java API for XML Processing lets you use any conforming parser implementation in a standard way. The code should be much more portable, and when you realise that a specific parser has grown too old, you can replace it with another without changing a line of your code (if you do it correctly).
Basically there are two ways of handling XML in a standard way:
- SAX This is the simplest API. You read/modify the XML by defining a Handler class that receives the data inside elements/attributtes when the XML gets processed in a serial way. It is faster and simpler if you only plan to read some attributes/elements and/or write some values back (your case).
- DOM This method creates an object tree which lets you modify/access it randomly so it is better for complex XML manipulation and handling.
Forget about propietary APIs such as Jdom or Apache ones (i.e. Apache Xerces XMLSerializer) because will tie you to an specific implementation that can evolve in time or lose backwards compatibility, which will make you change your code in the future when you want to upgrade to a new version of Jdom or whatever parser you use. If you stick to Java standard API (using factories and interfaces) your code will be much more modular and maintenable.
There is no need to say that all (I haven't checked all, but I'm almost sure) of the parsers proposed comply with a JAXP implememtation so technically you can use all, no matter which.