That is a bug in the assembly plugin. I also noticed that about a year ago. The latest version of the assembly plugin does not have the problem. I would recommend updating the version of the assembly plugin you are using to 2.2 beta 3. It should resolve your issue.
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<groupId>org.apache.maven.plugins</groupId>
<version>2.2-beta-3</version>
</plugin>
Chris Dail
2009-05-11 15:23:48