Like (probably) most people here, I'm not a fan of Software Patents. It makes it hard to write software, especially for an operating system like Mac OS X, where you generally want to do things "the Macintosh way".
But when Apple patents techniques that they use in their own OS and software, it's very difficult for third-party developers to replicate the Mac experience if they are violating a patent.
For instance, there are a couple of instance where I would like to represent a collection of thumbnail images with the "skim" technique used in iPhoto for events and iMovie for scrubbing through a clip. It looks like these are described in patents number 20080225153 and/or 20080155458.
In spite of these patents, and the fairly wide-spread knowledge of their existence (it was highly publicized when iPhoto 08 came out) there are some third-party application that use this skimming technique. So technically they are (probably) in violation of the above patent(s).
But would Apple come down on them if they were to discover them? Is Apple going to go after its own developers? Has anybody heard of that happening before? Is it worth the risk to just go ahead and implement it, with the hopes that Apple won't sue or issue a Cease and Desist?