The reason the find duplicates query won't let you delete the records is because it is basically just an aggregate query, it is counting the number of duplicates it finds and returning the cases where the count is greater than 1.
Consider that if you did make a delete query based on the find duplicates, it would delete all rows that have duplicate values, which is maybe not what you want. You want to delete all but one of the duplicates.
You should try to delete all duplicates of a record apart from one, excluding the ID column in your comparison. I suggest the simplest way to do this is to make a make-table query of all the unique values (Select Distinct Field1, Field2... from MyTable) instead for every field except for the ID field, using the results in a to create a new table of around 2000 records (if half are duplicates).
Then, create an ID column on your new table, use an update query to update this ID to the first matching ID in the original table (you could do this using DLookup, which will return the first EXPRESSION value where CRITERIA is true in DOMAIN).
The DLookup() function returns one
value from a single field even if more
than one record satisfies the
criteria. If no record satisfies the
criteria, or if the domain contains no
records, DLookup() returns a Null.
Since you are identifying the first matching ID based on all the other fields, which are unique values, the unmatched IDs will belong to duplicates. You will be reversing the PK relation, identifying the first matching key given a set of unique fields. After that, you should set the ID to be PK. Of course this assumes the ID has no inherent meaning, and you don't care about keeping one particular ID for a given duplicated row over any of the IDs belonging to the other duplicated rows. This assumes you care about the data in the ID column so you want to preserve it for all remaining rows, otherwise just ignore the DLookup step and do a Select Distinct on all columns apart from the ID.