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81

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2

I am creating some graphs which I want to update into a database table. The procedure I am following is:

  1. create the graphs as a png/jpeg file.
  2. Read that file as a binary vector
  3. sqlUpdate

My code for steps 2 & 3:

  pngfile <- file(<filename>, "rb")
  N <- 1e6
  repeat{
    pngfilecontents <- readBin(pngfile, what="raw", n=N)
    if(length(pngfilecontents) == N) N <- 5 * N else break
  }
  close(pngfile)

There is a table df_DemandPatternMaster in the database with primary key DemandPatternID, with appropriate record in place with NULL value in pngFile field.

  update.query <- "update df_DemandPatternMaster set "
  update.query <- paste( update.query, " pngFile = '", serialize(pngfilecontents, NULL) , "' where DemandPatternID = ", , sep="")
  d <- sqlQuery(connection, update.query)

I end up inserting only a byte of data. The reason it seems is that paste sees the serialized vector and creates a vector with the prefix & suffix text. I have also tried passing the pngfile handle directly

pngfile <- file(<filename>, "rb")
update.query <- paste( update.query, " pngFile = '", pngfile, "' where DemandPatternID = ", , sep="")

This also fails.

Please advise.

A: 

I have not tried this with a database, but I had some challenges recently when serializing to/from a text file. Here's a question I asked that might be related. Have you tried using the ascii=T switch with serialize? Then try it both with and without rawToChar.

I don't have an easy environment to test your code, but I am interested in what you come up with. I'm working on some code where I will eventually be serializing objects and putting them in a DB. I'm just not to that point yet.

JD Long
+2  A: 

Perhaps if you collapse the pngfilecontents vector into a single string. Something like:

update.query <- "update df_DemandPatternMaster set "
update.query <- paste( update.query, " pngFile = '", paste(pngfilecontents, collapse="") , "' where DemandPatternID = ", sep="")
Mark
Thanks Mark. paste(pngfilecontents, collapse="") works. I did not try JD Long's suggestion.
Baan
@Baan, you're welcome. If you could, please mark this answer accepted by clicking the check mark to the left. This cleans up the unanswered questions and I'd appreciate the reputation points :)
Mark