The answer is a big Maybe.
Targeting a different platform will certainly have a performance impact on your application as you're making a substantial change to the application. It has different size semantics for types, operations and very different operating system to interact.
These factors and many others will certainly lead to a performance change in your application. Whether it is subtle, huge, better, worse, etc ... will be highly specific to the type of application you are writing. It's not possible to give a general answer here without more details.