If it "aint" broken don't fix it. Look for the slow areas of your application, find the offending queries and analyze those query plans and address the index issues if any. Don't just start making changes in your system because you just learned something!
further reading: http://blogs.msdn.com/b/bartd/archive/2007/07/19/are-you-using-sql-s-missing-index-dmvs.aspx
try this query to find missing indexes:
--based on http://stackoverflow.com/questions/1540192/searching-for-table-index-scans
--this query will show cahced query plans that "SCAN", change comments for other things
;WITH XMLNAMESPACES(DEFAULT N'http://schemas.microsoft.com/sqlserver/2004/07/showplan')
, CachedPlans AS
(SELECT
RelOp.op.value(N'../../@NodeId', N'int') AS ParentOperationID
,RelOp.op.value(N'@NodeId', N'int') AS OperationID
,RelOp.op.value(N'@PhysicalOp', N'varchar(50)') AS PhysicalOperator
,RelOp.op.value(N'@LogicalOp', N'varchar(50)') AS LogicalOperator
,RelOp.op.value(N'@EstimatedTotalSubtreeCost ', N'float') AS EstimatedCost
,RelOp.op.value(N'@EstimateIO', N'float') AS EstimatedIO
,RelOp.op.value(N'@EstimateCPU', N'float') AS EstimatedCPU
,RelOp.op.value(N'@EstimateRows', N'float') AS EstimatedRows
,cp.plan_handle AS PlanHandle
,qp.query_plan AS QueryPlan
,st.TEXT AS QueryText
,cp.cacheobjtype AS CacheObjectType
,cp.objtype AS ObjectType
,cp.usecounts AS UseCounts
FROM sys.dm_exec_cached_plans cp
CROSS APPLY sys.dm_exec_sql_text(cp.plan_handle) st
CROSS APPLY sys.dm_exec_query_plan(cp.plan_handle) qp
CROSS APPLY qp.query_plan.nodes(N'//RelOp') RelOp (op)
)
SELECT
PlanHandle
,ParentOperationID
,OperationID
,PhysicalOperator
,LogicalOperator
,UseCounts
,CacheObjectType
,ObjectType
,EstimatedCost
,EstimatedIO
,EstimatedCPU
,EstimatedRows
,QueryText
FROM CachedPlans
WHERE CacheObjectType = N'Compiled Plan'
AND PhysicalOperator IN ('nothing will ever match this one!'
--,'Assert'
--,'Bitmap'
--,'Clustered Index Delete'
--,'Clustered Index Insert'
,'Clustered Index Scan'
--,'Clustered Index Seek'
--,'Clustered Index Update'
--,'Compute Scalar'
--,'Concatenation'
--,'Constant Scan'
,'Deleted Scan'
--,'Filter'
--,'Hash Match'
,'Index Scan'
--,'Index Seek'
--,'Index Spool'
,'Inserted Scan'
--,'Merge Join'
--,'Nested Loops'
--,'Parallelism'
,'Parameter Table Scan'
--,'RID Lookup'
--,'Segment'
--,'Sequence Project'
--,'Sort'
--,'Stream Aggregate'
--,'Table Delete'
--,'Table Insert'
,'Table Scan'
--,'Table Spool'
--,'Table Update'
--,'Table-valued function'
--,'Top'
)
or this one:
SELECT TOP 50
total_worker_time/execution_count AS Avg_CPU_Time
,execution_count
,total_elapsed_time/execution_count as AVG_Run_Time
,(SELECT
SUBSTRING(text,statement_start_offset/2,(CASE
WHEN statement_end_offset = -1 THEN LEN(CONVERT(nvarchar(max), text)) * 2
ELSE statement_end_offset
END -statement_start_offset)/2
) FROM sys.dm_exec_sql_text(sql_handle)
) AS query_text
FROM sys.dm_exec_query_stats
ORDER BY 3 DESC