Can't get rid of git submodule

Question

I added some Haml templates to my Rails 3 project with

git clone git://github.com/psynix/rails3_haml_scaffold_generator.git lib/generators/haml

only to find, when I tried to edit some of those files, that this was a submodule, so I couldn't commit changes that I made within the lib/generators/haml directory. Now every time I git status, I get

# On branch master
# Changed but not updated:
#   (use "git add <file>..." to update what will be committed)
#   (use "git checkout -- <file>..." to discard changes in working directory)
#
#   modified:   lib/generators/haml
#
no changes added to commit (use "git add" and/or "git commit -a")

but git add lib/generators/haml has no effect. I really just want to have the files, not a submodule, but I'm finding the submodule impossible to get rid of:

> git rm --cached lib/generators/haml
rm 'lib/generators/haml'
> git status

# Changes to be committed:
#   (use "git reset HEAD <file>..." to unstage)
#
#   deleted:    lib/generators/haml
#
# Untracked files:
#   (use "git add <file>..." to include in what will be committed)
#
#   lib/generators/

> git commit -m "Removed submodule"

[master 02ae4c7] Removed submodule
 1 files changed, 0 insertions(+), 1 deletions(-)
 delete mode 160000 lib/generators/haml

> git status

# On branch master
# Your branch is ahead of 'origin/master' by 1 commit.
#
# Untracked files:
#   (use "git add <file>..." to include in what will be committed)
#
#   lib/generators/
nothing added to commit but untracked files present (use "git add" to track)

> git add lib/generators/haml
> git status

# Changes to be committed:
#   (use "git reset HEAD <file>..." to unstage)
#
#   new file:   lib/generators/haml
#
# Changed but not updated:
#   (use "git add <file>..." to update what will be committed)
#   (use "git checkout -- <file>..." to discard changes in working directory)
#
#   modified:   lib/generators/haml

> git commit -m "Re-added lib/generators/haml"

[master c966912] Re-added lib/generators/haml
 1 files changed, 1 insertions(+), 0 deletions(-)
 create mode 160000 lib/generators/haml

> git status

# Changed but not updated:
#   (use "git add <file>..." to update what will be committed)
#   (use "git checkout -- <file>..." to discard changes in working directory)
#
#   modified:   lib/generators/haml

Additional git adds are useless. If I try git rm -rf lib/generators/haml, I get

fatal: git rm: 'lib/generators/haml': Operation not permitted

It just won't die! I've looked up how to delete submodules, but in this case, there is no .submodules file, nor is there any mention of the submodule in .git/config. Yet if I run git submodule update, I get

No submodule mapping found in .gitmodules for path 'lib/generators/haml'

I deleted the directory, but I get the same results! What's going on? Do I need to create a .gitmodules file just to delete the submodule?

Answer 1

The submodule is shown in git status as modified if it has untracked files. If you invoke git diff lib/generators/haml, you'll most likeyl see something like this:

diff --git a/lib/generators/haml b/lib/generators/haml
index 3019fec..653c59a 160000
--- a/lib/generators/haml
+++ b/lib/generators/haml
@@ -1 +1 @@
-Subproject commit 653c59ad72925c9ccbde67e8e484e15d4b6dd25d
+Subproject commit 653c59ad72925c9ccbde67e8e484e15d4b6dd25d-dirty

This means that inside this submodule are some untracked files left. They can't be added through commands in the parent project; instead you should traverse into the sumbodule and add them (or add entries to .gitignore)... Or you can just ignore the status message.

The latest git version (1.7.1, I think) shows this information in status:

# Changed but not updated:
#   (use "git add <file>..." to update what will be committed)
#   (use "git checkout -- <file>..." to discard changes in working directory)
#
#   modified:   lib/generators/haml (untracked content)

Answer 2

If there is no submodule, is it possible it (i.e. 'haml') is actually not a submodule?

git clone git://github.com/psynix/rails3_haml_scaffold_generator.git lib/generators/haml

means: create lib/generators/haml directory, and checkout in it the master branch of git://github.com/psynix/rails3_haml_scaffold_generator.git.

The fact that you can do a git status not from the root of your new repo ( lib/generators/haml), but three levels above (where lib is) means you have clone a repo within a repo.

Both repo can work independently, but you should add lib/generators/haml to the .gitignore of the parent repo (like in hits SO question).