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Maybe it's the wrong place to ask this kind of question, but I am giving it a shot cause stack's probably the best place to have an answer for other programmers. So, it there any third party or netbeans plugin that can be substitute of jindent, a tool to structure our code?

+2  A: 

If you need to do "batch" processing of alot of files, you may not need a solution that is specific to Netbeans. There are alot of options linked in this SO question: http://stackoverflow.com/questions/996646/stand-alone-java-code-formatter-beautifier-pretty-printer.

Arnold Spence
+1  A: 

http://www.triemax.com/products/jalopy/manual/plugin-netbeans.html

Jalopy does the job very well and is even able to format files with guarded sections

Soares