This isn't an easy question, as Eclipse does not support changing existing wizards (and on global, Eclipse is built for adding features instead of replacing them).
Some ideas you could consider: you can define a new wizard, that can reuse existing pages, and simply add a new wizard, that does your trick, while the original one would stay.
How to install it: if you have a new wizard in a new plug-in, simply use the export wizard (Right click/Export), and there select the Deployable plug-ins and fragments wizard from the Plug-in development category. On the next page select the install into host feature, and the plug-in will be installed.
If you insist on replacing the plug-in (that is not the nice way), you could copy the entire existing plug-in, increase its version number and make your changes, then install this plug-in from an update site (or using the Eclipse wizard). Caveats: if the original plug-in is updated, yours have to be as well, and if both plug-ins have the same version, quite nice conflicts can be seen, that are quite hard to handle.