Generally Linux distros aren't very interested in things they can't integrate into their release schedules. Since JNLP allows you to deploy a new version at any time, they can't do a version freeze before release. This will exclude you from most distros - Debian even removed Adobe's flash plugin for this very reason, and if they'll remove Flash, don't expect them to make exceptions for a less well known application.
If you're willing to distribute it as just a plain .jar, you might be able to get it in - for debian, you'll want to read the Debian New Maintainer's Guide and Debian Policy on how to package things, submit an ITP (intent to package), upload a package, then seek sponsorship on the debian-mentors mailing list. More info can be found at the Debian mentors FAQ. Packages submitted to Debian will also make their way into Ubuntu in due course.
Other distributions will have different policies, of course; if in doubt, check their faqs, or ask on an appropriate mailing list for the distro in question.