You have to change / update the manifest resource from the dlls.
mt.exe -inputresource:dll_with_manifest.dll;#1 -out:old.manifest
mt.exe -manifest new.manifest -outputresource:dll_with_manfiest.dll;#1
Sometimes the RT_MANIFEST (type 24) resource type doesn't have the #1 index in resource table, you should use a Resource Viewer (ResourceHacker, or ResEdit) and find out the index number. I have seen cases when the manifest has the #2 index number.