GLPK
I'm offering an answer using GLPK's glpsol, but I hope there are much better ways to do this (it seems like GLPK is overly powerful/general for this kind of simple special case of a linear programming problem):
In order to generate the .mps file given below you've got to split up your matrices row-wise into a system of equations, so the problem description becomes:
minimize
cost = 1 x_1 + 2 x_2 + 3 x_3
s.t. constraints:
S1 = 1 x_1 + 0 x_2 + 0 x_3
S2 = 0 x_1 + 1 x_2 + 0 x_3
S3 = 1 x_1 + 0 x_2 + 1 x_3
S1 >= 1
S2 >= 1
S3 >= 1
0 <= x1 <= 1
0 <= x2 <= 1
0 <= x3 <= 1
GLPK documentation has detailed info on the .mps format, but you specify the rows, columns, rhs, and bounds. In the ROWS section the 'N' and 'G' specify the type of constraint (number, and greater than respectively). In the BOUNDS section the 'UI' specifies that the bounds are upper integer type, forcing the solution to be integer.
To run the solver on the problem specification:
> glpsol --freemps example.mps -o example.out
example.mps file:
NAME VM
ROWS
N cost
G S1
G S2
G S3
COLUMNS
x_1 cost 1.0
x_1 S1 1.0
x_1 S3 1.0
x_2 cost 2.0
x_2 S2 1.0
x_3 cost 3.0
x_3 S3 1.0
RHS
RHS1 cost 0.0
RHS1 S1 1.0
RHS1 S2 1.0
RHS1 S3 1.0
BOUNDS
UI BND1 x_1 1.0
UI BND1 x_2 1.0
UI BND1 x_3 1.0
ENDATA
outputs:
Problem: VM
Rows: 4
Columns: 3 (3 integer, 3 binary)
Non-zeros: 7
Status: INTEGER OPTIMAL
Objective: cost = 3 (MINimum)
No. Row name Activity Lower bound Upper bound
------ ------------ ------------- ------------- -------------
1 cost 3
2 S1 1 1
3 S2 1 1
4 S3 1 1
No. Column name Activity Lower bound Upper bound
------ ------------ ------------- ------------- -------------
1 x_1 * 1 0 1
2 x_2 * 1 0 1
3 x_3 * 0 0 1
Integer feasibility conditions:
INT.PE: max.abs.err. = 0.00e+00 on row 0
max.rel.err. = 0.00e+00 on row 0
High quality
INT.PB: max.abs.err. = 0.00e+00 on row 0
max.rel.err. = 0.00e+00 on row 0
High quality
End of output
Also, I'm not clear on how to directly get the x vector that solves the problem, though it is encoded in the output above in this section:
No. Column name Activity
------ ------------ -------------
1 x_1 * 1
2 x_2 * 1
3 x_3 * 0